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Mass Spectrometry
The mass spectrometer facility occupies a renovated 1200 square feet laboratory in basement of Crellin, Room 70.

Facility instrumentation consists of:

Link here for details on: Operation, Schedule, Fees, Contact Information, and Useful Links.

Mass Spectrometry Request Form (pdf)
Mass Spectrometry Request Form (ChemDraw cdx)

Hewlett-Packard 5970B MSD with 5890 GC for GC-MS analysis

This system is suitable for separation of complex mixtures by gas chromatography (GC) and identification by mass spectrometry. It is limited to low molecular weight and volatile molecules (mass limit 500 Da). The gas chromatograph uses a DB-5 capillary column that is useful for separation of most non-polar species.

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HP 5970B MSD

Finnigan LCQ ion trap mass spectrometer with Surveyor Autosampler and HPLC pump

The LCQ is equipped with an electrospray ionization source, and is suited for mass analysis of a broad range of molecules that are relatively polar, nonvolatile and thermally labile. The tendency to form multiply charged species during ionization extends the available mass range (normally 2000 Da) to higher limits.

The LCQ may be operated in direct infusion mode or with an LC. In direct infusion analysis, the analyte solution is in a syringe and flows to the electrospray source using a syringe pump. In LC-MS, the analyte solution is injected onto an HPLC column and the column eluent flows to the electrospray source. Currently, the LC-MS option is dedicated primarily to microscale analysis of protein digests.

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Finnigan LCQ ion trap

Applied Biosystems Voyager DE-PRO MALDI TOF-MS

The DE-PRO is a time-of-flight (TOF) mass spectrometer equipped with a matrix-assisted laser desorption ionization (MALDI) ion source. It uses a 20-Hz nitrogen laser and is capable of operation in linear and/or reflected ion modes. The "unlimited" mass range of the TOF mass spectrometer and "soft ionization" characteristic of MALDI enable analysis of many macromolecules including large proteins, oligonucleotides, polysaccharides and select synthetic polymers.

Training Video: View Quicktime Movie

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DE-PRO

JEOL JMS-600H High Resolution Mass Spectrometer

The JMS-600H is a compact double-focusing, high-resolution, magnetic sector mass spectrometer with resolving power of 25,000, using the 10% valley definition. This instrument will be used for exact mass measurement of molecules. Samples may be introduced into the ion source using a gas chromatograph (GC) or a direct insertion probe (DIP) and ionized by electron ionization (EI) and/or chemical ionization (CI). Polar and nonvolatile samples are usually introduced into the ion source by the FAB probe and ionized by fast atom bombardment (FAB).

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JEOL JMS-600H

Operation
All facility instrumentation is available to trained users with the exception of JMS-600H. Newcomers should schedule time with the facility manager to discuss mass spectrometry needs and receive training. Instrument time is currently booked by signing the calendar for each mass spectrometer (2-hour limit).

Infrequent MS users as well as off-campus individuals may submit samples for analysis. Please use Mass Spectrometry Request Form provided.

Schedule (Review This Section Often)
The following schedule is currently in effect for the LCQ.

Mondays and Tuesdays are reserved primarily for LC-MS operation. The remaining days are reserved for direct infusion analysis. Please check notices on the instrument as this schedule may change with changing projects and needs in the division.

The LC-MS operation is primarily focused on microscale analysis of protein digests.

Fees
The hourly rate for the use of mass spectrometry instrumentation is: $64.00 per hour for the LCQ ion trap, LC-MS and Voyager DE-PRO TOF-MS
$28.00 per hour for the HP5970 GC-MS

Times of use will be rounded off to 1/4 hour or 15 minutes.

Service fees for samples submitted for routine mass analysis are $40 for university users and $100 for non-university users. Additional fees will be charged for samples requiring clean-up and extensive preparation.

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Contact Information

Mona Shahgholi, Ph.D.
Office: 66 Crellin
Lab: 70 Crellin
Telephone: (626) 395-3372
e-mail: monas@caltech.edu

Mailing address

Caltech
Chemistry 164-30
1200 East California Blvd
Pasadena, CA 91125

Useful Links


Mass Spectrometry Request Form (pdf)

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